Publications of Aukje Marieke Oudelaar
All genres
Journal Article (29)
1.
Journal Article
56, pp. 483 - 492 (2024)
In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization. Nature Genetics 2.
Journal Article
52 (2), pp. 793 - 802 (2024)
Genome organization across scales: mechanistic insights from in vitro reconstitution studies. Biochemical Society Transactions 3.
Journal Article
30 (7), pp. 876 - 877 (2023)
The Mediator complex regulates long-range communication in the genome. Nature Structural & Molecular Biology 4.
Journal Article
30, pp. 991 - 1000 (2023)
The Mediator complex regulates enhancer-promoter interactions. Nature Structural and Molecular Biology 5.
Journal Article
79, 102022 (2023)
The role of loop extrusion in enhancer-mediated gene activation. Current Opinion in Genetics & Development 6.
Journal Article
54 (7), pp. 914 - 915 (2022)
Deciphering the regulatory logic of a chromatin domain boundary. Nature Genetics 7.
Journal Article
13, 2139 (2022)
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF. Nature Communications 8.
Journal Article
17 (2), pp. 445 - 475 (2022)
Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture. Nature Protocols 9.
Journal Article
13, 773 (2022)
Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development. Nature Communications 10.
Journal Article
12, 4439 (2021)
Reactivation of a developmentally silenced embryonic globin gene. Nature Communications 11.
Journal Article
595 (7865), pp. 125 - 129 (2021)
Defining genome architecture at base-pair resolution. Nature 12.
Journal Article
12, 3806 (2021)
A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker. Nature Communications 13.
Journal Article
67, pp. 18 - 24 (2021)
The mouse alpha-globin cluster: A paradigm for studying genome regulation and organization. Current Opinion in Genetics & Development 14.
Journal Article
81 (5), pp. 983 - 997.e7 (2021)
Enhancers predominantly regulate gene expression during differentiation via transcription initiation. Molecular Cell 15.
Journal Article
22, pp. 154 - 168 (2021)
The relationship between genome structure and function. Nature Reviews Genetics 16.
Journal Article
12, 531 (2021)
High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale. Nature Communications 17.
Journal Article
17 (11), pp. 1118 - 1124 (2020)
DeepC: predicting 3D genome folding using megabase-scale transfer learning. Nature Methods 18.
Journal Article
11, 2722 (2020)
Dynamics of the 4D genome during in vivo lineage specification and differentiation. Nature Communications 19.
Journal Article
30 (7), pp. 2125 - 2135.e1-e5 (2020)
A dynamic folded hairpin conformation is associated with α-globin activation in erythroid cells. Cell Reports 20.
Journal Article
10, 5412 (2019)
A revised model for promoter competition based on multi-way chromatin interactions at the α-globin locus. Nature Communications